PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016495917.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 427aa    MW: 46590.4 Da    PI: 9.4111
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016495917.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-05194216223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C++Cg+ F  ++ L++H  + H
  XP_016495917.1 194 TCHKCGEQFGKWEALESHHLSkH 216
                     7*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280195216IPR007087Zinc finger, C2H2
SuperFamilySSF563992.88E-21218426No hitNo description
Gene3DG3DSA:3.90.228.101.1E-7231406IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MGEKKNMPAV WFSLKRSLHC KSEPSDVHDP KTKKQLSTIL TRKGGGGGGG GSRSGCSRSI  60
ANLKDVIHGS KRHLEKPPSC SPRSIGSSEF LNPITHEVIL SNSRCELKIT SFNGFQESSP  120
SSTFVGTLRP GTPGPGGNPT MHYFNSGCRN SVATPTRRSA SFLVDKEGSA NSFPCKTTRH  180
SLDNDVNGTS SGVTCHKCGE QFGKWEALES HHLSKHAVSE LLEGDSSRKI VEIICRSSWL  240
KSESHVGRIE RVLKVHNTQK TLARFEEYRE MVKIKASKLP KKHPRCIADG NELLRFYGTT  300
LACGLGMNGT CSLCVSDKCC VCRIIRNGFT TKKELKGGIG VFTTSTSARA YECIELSEDD  360
PSLRKALIVC RVVAGRVHRP LENIQEMAGQ TGFDSLAGKV GVYSNIEELY LLNPRALLPC  420
FVVICKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5609000.0EU560900.1 Capsicum annuum clone DEG190-B transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016495917.10.0PREDICTED: uncharacterized protein LOC107814927
TrEMBLM1BNU50.0M1BNU5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000494910.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22442235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-175C2H2 family protein